Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC11.92□□□□□ -0.5
HMGB3O15347 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 PFN2-205ENST00000461868 613 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 AC074386.1-202ENST00000463561 864 ntBASIC11.92□□□□□ -0.5
HMGB3O15347 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC11.92□□□□□ -0.5
HMGB3O15347 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
HMGB3O15347 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 EPB41L1-212ENST00000441639 5967 ntTSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 PCDH20-201ENST00000409204 4778 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HMGB3O15347 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC11.92□□□□□ -0.5
HMGB3O15347 PLXNA4-202ENST00000359827 13786 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
HMGB3O15347 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 ZNF831-203ENST00000637017 10953 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC11.91□□□□□ -0.5
HMGB3O15347 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
HMGB3O15347 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC11.91□□□□□ -0.5
HMGB3O15347 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
HMGB3O15347 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.91□□□□□ -0.5
HMGB3O15347 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 ABCC5-202ENST00000334444 5921 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC11.91□□□□□ -0.5
HMGB3O15347 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
HMGB3O15347 MARCH8-204ENST00000453424 5638 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HMGB3O15347 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 MROH7-TTC4-201ENST00000414150 5867 ntAPPRIS P5 TSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms