Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 OS9-218ENST00000551035 2246 ntTSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AC090643.2-201ENST00000623442 2029 ntBASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 BEND3P3-201ENST00000611030 2440 ntBASIC10.82□□□□□ -0.68
SMKR1H3BMG3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 CD81-202ENST00000381036 880 ntTSL 3 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 RN7SL828P-201ENST00000607615 303 ntBASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AL133215.2-201ENST00000609242 977 ntBASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AC018529.1-201ENST00000613063 361 ntBASIC10.82□□□□□ -0.68
SMKR1H3BMG3 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC10.82□□□□□ -0.68
SMKR1H3BMG3 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
SMKR1H3BMG3 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 STK3-218ENST00000617590 2485 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 Z97205.2-201ENST00000564697 1639 ntBASIC10.81□□□□□ -0.68
SMKR1H3BMG3 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 AC004066.1-201ENST00000502488 802 ntBASIC10.81□□□□□ -0.68
SMKR1H3BMG3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms