Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS4AQ9UN37 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 AP000812.2-201ENST00000538934 718 ntBASIC14.39□□□□□ -0.11
VPS4AQ9UN37 RIT1-205ENST00000539040 919 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 AL158212.4-201ENST00000624062 1286 ntBASIC14.39□□□□□ -0.11
VPS4AQ9UN37 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS4AQ9UN37 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 SOCS2P1-201ENST00000417727 557 ntBASIC14.38□□□□□ -0.11
VPS4AQ9UN37 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AC016694.1-201ENST00000434179 700 ntBASIC14.38□□□□□ -0.11
VPS4AQ9UN37 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 RPL13AP25-201ENST00000484130 612 ntBASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AP001258.2-201ENST00000529891 490 ntBASIC14.38□□□□□ -0.11
VPS4AQ9UN37 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AP001267.2-201ENST00000532619 2086 ntBASIC14.38□□□□□ -0.11
VPS4AQ9UN37 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms