Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 AC041040.2-201ENST00000622926 2899 ntBASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 AC020910.6-201ENST00000623084 1459 ntBASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 HMGN1P19-201ENST00000436976 333 ntBASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 PUDPP3-201ENST00000445368 636 ntBASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 AC106820.3-201ENST00000561653 397 ntBASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.15
VPS29Q9UBQ0 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AC011498.7-201ENST00000624986 2027 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AC092933.1-201ENST00000393644 945 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 BCRP2-202ENST00000447763 634 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 BCRP6-201ENST00000510112 632 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 BCRP7-201ENST00000511549 544 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 ECM1P1-201ENST00000604092 1279 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 AL022328.1-201ENST00000610050 478 ntBASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS29Q9UBQ0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms