Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RN7SL556P-201ENST00000582856 298 ntBASIC21.55■■□□□ 1.04
SCAPERQ9BY12 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC21.55■■□□□ 1.04
SCAPERQ9BY12 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 HNRNPA1P2-207ENST00000432375 960 ntBASIC21.55■■□□□ 1.04
SCAPERQ9BY12 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 AC092896.1-201ENST00000465850 380 ntBASIC21.55■■□□□ 1.04
SCAPERQ9BY12 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SCAPERQ9BY12 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 AC138761.6-201ENST00000583997 1423 ntBASIC21.54■■□□□ 1.04
SCAPERQ9BY12 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 NHP2P1-201ENST00000335274 462 ntBASIC21.54■■□□□ 1.04
SCAPERQ9BY12 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 PGAM1P11-201ENST00000416729 680 ntBASIC21.54■■□□□ 1.04
SCAPERQ9BY12 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 GALP-202ENST00000440823 889 ntTSL 5 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 CES1P2-201ENST00000566467 1242 ntBASIC21.54■■□□□ 1.04
SCAPERQ9BY12 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 AC004686.1-201ENST00000605113 538 ntBASIC21.54■■□□□ 1.04
SCAPERQ9BY12 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCAPERQ9BY12 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 BCRP4-201ENST00000506079 804 ntBASIC21.53■■□□□ 1.04
SCAPERQ9BY12 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 AL136982.5-201ENST00000605222 294 ntBASIC21.53■■□□□ 1.04
SCAPERQ9BY12 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 CELP-203ENST00000624767 2414 ntTSL 5 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
SCAPERQ9BY12 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
SCAPERQ9BY12 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC21.52■■□□□ 1.04
SCAPERQ9BY12 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SCAPERQ9BY12 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SCAPERQ9BY12 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SCAPERQ9BY12 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms