Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 ACTBP8-201ENST00000403258 1108 ntBASIC14.23□□□□□ -0.13
VMP1Q96GC9 AL139094.1-201ENST00000405549 1188 ntBASIC14.23□□□□□ -0.13
VMP1Q96GC9 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 ARSEP1-201ENST00000420443 635 ntBASIC14.23□□□□□ -0.13
VMP1Q96GC9 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 ATP5G2P4-201ENST00000442175 420 ntBASIC14.23□□□□□ -0.13
VMP1Q96GC9 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 AL512343.1-201ENST00000605837 169 ntBASIC14.23□□□□□ -0.13
VMP1Q96GC9 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.23□□□□□ -0.13
VMP1Q96GC9 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VMP1Q96GC9 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC099521.3-201ENST00000624251 2938 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 CICP11-201ENST00000434745 2827 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms