Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.9■□□□□ 0.62
USP54Q70EL1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
USP54Q70EL1 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
USP54Q70EL1 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC18.9■□□□□ 0.62
USP54Q70EL1 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC18.9■□□□□ 0.62
USP54Q70EL1 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC18.9■□□□□ 0.62
USP54Q70EL1 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC18.9■□□□□ 0.62
USP54Q70EL1 RBM4-207ENST00000506523 654 ntTSL 3 BASIC18.9■□□□□ 0.62
USP54Q70EL1 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC18.9■□□□□ 0.62
USP54Q70EL1 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC18.9■□□□□ 0.62
USP54Q70EL1 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
USP54Q70EL1 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
USP54Q70EL1 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP54Q70EL1 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
USP54Q70EL1 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
USP54Q70EL1 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.89■□□□□ 0.62
USP54Q70EL1 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.89■□□□□ 0.62
USP54Q70EL1 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP54Q70EL1 SSR4-202ENST00000370085 526 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 MIR1301-201ENST00000408518 82 ntBASIC18.89■□□□□ 0.61
USP54Q70EL1 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC18.89■□□□□ 0.61
USP54Q70EL1 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.89■□□□□ 0.61
USP54Q70EL1 CES1P2-201ENST00000566467 1242 ntBASIC18.89■□□□□ 0.61
USP54Q70EL1 GARS-210ENST00000627489 324 ntTSL 4 BASIC18.89■□□□□ 0.61
USP54Q70EL1 ESR1-214ENST00000638569 132 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 U3.5-201ENST00000363448 216 ntBASIC18.89■□□□□ 0.61
USP54Q70EL1 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 AC005722.1-201ENST00000431878 964 ntBASIC18.89■□□□□ 0.61
USP54Q70EL1 ZNF877P-201ENST00000437614 612 ntBASIC18.89■□□□□ 0.61
USP54Q70EL1 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 AC008026.2-201ENST00000495438 348 ntBASIC18.89■□□□□ 0.61
USP54Q70EL1 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC18.89■□□□□ 0.61
USP54Q70EL1 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP54Q70EL1 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC18.89■□□□□ 0.61
USP54Q70EL1 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC18.89■□□□□ 0.61
USP54Q70EL1 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.88■□□□□ 0.61
USP54Q70EL1 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
USP54Q70EL1 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP54Q70EL1 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC18.88■□□□□ 0.61
USP54Q70EL1 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC18.88■□□□□ 0.61
USP54Q70EL1 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC18.88■□□□□ 0.61
USP54Q70EL1 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC18.88■□□□□ 0.61
USP54Q70EL1 AC023968.2-201ENST00000560593 1049 ntBASIC18.88■□□□□ 0.61
USP54Q70EL1 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC18.88■□□□□ 0.61
USP54Q70EL1 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP54Q70EL1 AP000769.1-203ENST00000637245 208 ntBASIC18.88■□□□□ 0.61
USP54Q70EL1 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC18.88■□□□□ 0.61
USP54Q70EL1 TUBB4AP1-201ENST00000450755 1325 ntBASIC18.88■□□□□ 0.61
USP54Q70EL1 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP54Q70EL1 PAUPAR-201ENST00000630360 2965 ntBASIC18.88■□□□□ 0.61
USP54Q70EL1 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC18.87■□□□□ 0.61
USP54Q70EL1 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
USP54Q70EL1 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP54Q70EL1 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms