Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 AC004466.1-201ENST00000599515 1080 ntBASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 AC107918.4-201ENST00000641966 3141 ntBASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC144BQ3MJ40 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AL354877.1-201ENST00000424412 413 ntBASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 AC138466.3-201ENST00000619983 221 ntBASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 CLUHP2-201ENST00000426660 1303 ntBASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC144BQ3MJ40 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 AC092135.3-201ENST00000624151 1846 ntBASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 AC063926.3-201ENST00000624734 5658 ntBASIC17.1■□□□□ 0.33
CCDC144BQ3MJ40 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms