Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
NKX2-2O95096 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
NKX2-2O95096 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.57□□□□□ -0.24
NKX2-2O95096 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 AC079178.1-201ENST00000420915 656 ntBASIC13.57□□□□□ -0.24
NKX2-2O95096 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 AC244157.2-201ENST00000616239 1006 ntBASIC13.57□□□□□ -0.24
NKX2-2O95096 AC016397.2-201ENST00000624848 1985 ntBASIC13.57□□□□□ -0.24
NKX2-2O95096 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.57□□□□□ -0.24
NKX2-2O95096 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
NKX2-2O95096 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 AC064801.2-201ENST00000625052 1303 ntBASIC13.57□□□□□ -0.24
NKX2-2O95096 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
NKX2-2O95096 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX2-2O95096 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
NKX2-2O95096 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
NKX2-2O95096 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX2-2O95096 E2F3P2-201ENST00000447755 1422 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
NKX2-2O95096 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.56□□□□□ -0.24
NKX2-2O95096 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
NKX2-2O95096 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
NKX2-2O95096 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX2-2O95096 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.56□□□□□ -0.24
NKX2-2O95096 YBX1P6-201ENST00000442962 1002 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.56□□□□□ -0.24
NKX2-2O95096 AC005586.2-201ENST00000563946 837 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 AC009955.4-201ENST00000597192 544 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 AC133552.6-201ENST00000613406 534 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 COX11-210ENST00000639671 696 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 LINC01230-201ENST00000625222 3017 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
NKX2-2O95096 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX2-2O95096 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.56□□□□□ -0.24
NKX2-2O95096 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 AC097376.2-205ENST00000610159 5334 ntBASIC13.56□□□□□ -0.24
NKX2-2O95096 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX2-2O95096 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX2-2O95096 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms