Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.07■□□□□ 0.16
RNF40O75150 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.07■□□□□ 0.16
RNF40O75150 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNF40O75150 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RNF40O75150 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RNF40O75150 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF40O75150 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF40O75150 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RNF40O75150 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF40O75150 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RNF40O75150 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF40O75150 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.07■□□□□ 0.16
RNF40O75150 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNF40O75150 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC16.07■□□□□ 0.16
RNF40O75150 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.06■□□□□ 0.16
RNF40O75150 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RNF40O75150 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.06■□□□□ 0.16
RNF40O75150 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.06■□□□□ 0.16
RNF40O75150 C1QBPP1-201ENST00000400117 770 ntBASIC16.06■□□□□ 0.16
RNF40O75150 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.06■□□□□ 0.16
RNF40O75150 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.06■□□□□ 0.16
RNF40O75150 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 SLED1-202ENST00000512051 380 ntBASIC16.06■□□□□ 0.16
RNF40O75150 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.06■□□□□ 0.16
RNF40O75150 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC16.06■□□□□ 0.16
RNF40O75150 AL049840.4-201ENST00000602422 811 ntBASIC16.06■□□□□ 0.16
RNF40O75150 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
RNF40O75150 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
RNF40O75150 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF40O75150 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RNF40O75150 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
RNF40O75150 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
RNF40O75150 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
RNF40O75150 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF40O75150 AL133338.1-201ENST00000565695 1517 ntBASIC16.05■□□□□ 0.16
RNF40O75150 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 SRC-202ENST00000373558 4304 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF40O75150 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 TUBB1P2-201ENST00000422712 1306 ntBASIC16.05■□□□□ 0.16
RNF40O75150 TUBB1P1-201ENST00000503144 1300 ntBASIC16.05■□□□□ 0.16
RNF40O75150 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
RNF40O75150 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.05■□□□□ 0.16
RNF40O75150 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.05■□□□□ 0.16
RNF40O75150 FAM21FP-201ENST00000426241 1131 ntBASIC16.05■□□□□ 0.16
RNF40O75150 AC245100.3-201ENST00000441281 285 ntBASIC16.05■□□□□ 0.16
RNF40O75150 RPL7P3-201ENST00000441388 714 ntBASIC16.05■□□□□ 0.16
RNF40O75150 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 FO681548.1-201ENST00000455617 1132 ntBASIC16.05■□□□□ 0.16
RNF40O75150 VDAC1P7-201ENST00000462417 847 ntBASIC16.05■□□□□ 0.16
RNF40O75150 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 RNA5SP412-201ENST00000516234 123 ntBASIC16.05■□□□□ 0.16
RNF40O75150 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC16.05■□□□□ 0.16
RNF40O75150 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 AC120045.2-201ENST00000567334 178 ntBASIC16.05■□□□□ 0.16
RNF40O75150 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
RNF40O75150 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 MIR6869-201ENST00000619434 62 ntBASIC16.05■□□□□ 0.16
RNF40O75150 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF40O75150 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms