Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 SOD1-202ENST00000389995 865 ntTSL 3 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 CRIP1P2-201ENST00000425396 228 ntBASIC11.14□□□□□ -0.63
COL6A5A8TX70 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 RN7SL788P-201ENST00000460504 316 ntBASIC11.14□□□□□ -0.63
COL6A5A8TX70 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 PMM2-216ENST00000569958 698 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AL136982.5-201ENST00000605222 294 ntBASIC11.14□□□□□ -0.63
COL6A5A8TX70 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 GCK-209ENST00000616242 2260 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 HNRNPA1P10-201ENST00000444945 962 ntBASIC11.14□□□□□ -0.63
COL6A5A8TX70 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 PDLIM1P1-201ENST00000604187 969 ntBASIC11.14□□□□□ -0.63
COL6A5A8TX70 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 EML1-203ENST00000334192 4064 ntTSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 FTH1P18-201ENST00000412071 549 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 AC092573.1-201ENST00000433054 884 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 MARK2P17-201ENST00000498560 841 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 RN7SL480P-201ENST00000581481 294 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 AC080080.1-201ENST00000625121 2420 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 LINC00554-201ENST00000564841 3011 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 OR7E12P-201ENST00000344740 973 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 RPSAP70-201ENST00000504462 864 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms