Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 AL035252.4-201ENST00000624174 288 ntBASIC15.27■□□□□ 0.04
PCDH9Q9HC56 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH9Q9HC56 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AC063926.2-201ENST00000623766 1308 ntBASIC15.26■□□□□ 0.03
PCDH9Q9HC56 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 GCOM2-201ENST00000509133 1104 ntBASIC15.26■□□□□ 0.03
PCDH9Q9HC56 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AC004466.1-201ENST00000599515 1080 ntBASIC15.26■□□□□ 0.03
PCDH9Q9HC56 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 AC215219.1-201ENST00000400706 1817 ntBASIC15.26■□□□□ 0.03
PCDH9Q9HC56 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH9Q9HC56 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AL138709.1-201ENST00000614840 1693 ntBASIC15.25■□□□□ 0.03
PCDH9Q9HC56 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms