Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC026336.4-201ENST00000624565 1050 ntBASIC14.53□□□□□ -0.08
TTC28Q96AY4 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TTC28Q96AY4 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TTC28Q96AY4 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 RFNG-202ENST00000429557 994 ntTSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
TTC28Q96AY4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TTC28Q96AY4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TTC28Q96AY4 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
TTC28Q96AY4 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 CCDC153-202ENST00000415318 1173 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 Z84721.1-201ENST00000438841 372 ntBASIC14.52□□□□□ -0.09
TTC28Q96AY4 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 PSME2P2-201ENST00000453033 700 ntBASIC14.52□□□□□ -0.09
TTC28Q96AY4 RN7SL351P-201ENST00000469306 248 ntBASIC14.52□□□□□ -0.09
TTC28Q96AY4 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
TTC28Q96AY4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
TTC28Q96AY4 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 TUBA3GP-201ENST00000410028 1325 ntBASIC14.51□□□□□ -0.09
TTC28Q96AY4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 RNA5SP420-201ENST00000516997 137 ntBASIC14.51□□□□□ -0.09
TTC28Q96AY4 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 KRT8P28-201ENST00000433288 1390 ntBASIC14.51□□□□□ -0.09
TTC28Q96AY4 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 AC005740.1-201ENST00000515639 522 ntBASIC14.51□□□□□ -0.09
TTC28Q96AY4 AC023051.2-201ENST00000541141 460 ntBASIC14.51□□□□□ -0.09
TTC28Q96AY4 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
TTC28Q96AY4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TTC28Q96AY4 AC090340.1-201ENST00000620778 4980 ntBASIC14.5□□□□□ -0.09
TTC28Q96AY4 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TTC28Q96AY4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TTC28Q96AY4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TTC28Q96AY4 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.5□□□□□ -0.09
TTC28Q96AY4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TTC28Q96AY4 RPS6-201ENST00000315377 863 ntTSL 3 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms