Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MRPS18AP1-201ENST00000414458 589 ntBASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 FAM9B-203ENST00000428477 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 HIST3H2BA-201ENST00000436555 524 ntBASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 TIMM17BP1-201ENST00000545713 516 ntBASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AC018665.1-201ENST00000622927 1362 ntBASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AC087499.6-201ENST00000411576 835 ntBASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AL844908.2-201ENST00000609461 460 ntBASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 AC063926.2-201ENST00000623766 1308 ntBASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
DEPDC4Q8N2C3 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AL354702.1-201ENST00000442006 1960 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC089987.1-201ENST00000551654 2209 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms