Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.39■□□□□ 0.05
CDH6P55285 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.39■□□□□ 0.05
CDH6P55285 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.39■□□□□ 0.05
CDH6P55285 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.39■□□□□ 0.05
CDH6P55285 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.39■□□□□ 0.05
CDH6P55285 AC244669.2-201ENST00000612320 853 ntBASIC15.39■□□□□ 0.05
CDH6P55285 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.39■□□□□ 0.05
CDH6P55285 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
CDH6P55285 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.38■□□□□ 0.05
CDH6P55285 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.38■□□□□ 0.05
CDH6P55285 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CDH6P55285 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CDH6P55285 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 RN7SKP175-201ENST00000408472 289 ntBASIC15.38■□□□□ 0.05
CDH6P55285 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.38■□□□□ 0.05
CDH6P55285 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 AC016694.1-201ENST00000434179 700 ntBASIC15.38■□□□□ 0.05
CDH6P55285 GAPDHP21-201ENST00000450301 1010 ntBASIC15.38■□□□□ 0.05
CDH6P55285 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.38■□□□□ 0.05
CDH6P55285 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.38■□□□□ 0.05
CDH6P55285 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 OR10B1P-201ENST00000601666 907 ntBASIC15.38■□□□□ 0.05
CDH6P55285 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CDH6P55285 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CDH6P55285 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.38■□□□□ 0.05
CDH6P55285 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CDH6P55285 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH6P55285 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 GRK6P1-201ENST00000400595 1711 ntBASIC15.37■□□□□ 0.05
CDH6P55285 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms