Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.18□□□□□ -0.46
CDX1P47902 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 AC092552.1-201ENST00000547243 906 ntBASIC12.18□□□□□ -0.46
CDX1P47902 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC12.18□□□□□ -0.46
CDX1P47902 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
CDX1P47902 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC12.18□□□□□ -0.46
CDX1P47902 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 AC018892.3-201ENST00000623986 2499 ntBASIC12.18□□□□□ -0.46
CDX1P47902 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.18□□□□□ -0.46
CDX1P47902 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 AP001972.5-201ENST00000624624 2338 ntBASIC12.17□□□□□ -0.46
CDX1P47902 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
CDX1P47902 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
CDX1P47902 AC098850.1-201ENST00000419919 790 ntBASIC12.17□□□□□ -0.46
CDX1P47902 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.17□□□□□ -0.46
CDX1P47902 KRT18P64-201ENST00000434946 1219 ntBASIC12.17□□□□□ -0.46
CDX1P47902 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 KRT18P43-201ENST00000469825 1281 ntBASIC12.17□□□□□ -0.46
CDX1P47902 FAM86LP-201ENST00000478302 853 ntBASIC12.17□□□□□ -0.46
CDX1P47902 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.17□□□□□ -0.46
CDX1P47902 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.17□□□□□ -0.46
CDX1P47902 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.17□□□□□ -0.46
CDX1P47902 CTBP2P3-201ENST00000585629 1255 ntBASIC12.17□□□□□ -0.46
CDX1P47902 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CDX1P47902 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 MIR8072-201ENST00000614241 80 ntBASIC12.17□□□□□ -0.46
CDX1P47902 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
CDX1P47902 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CDX1P47902 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
CDX1P47902 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
CDX1P47902 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.17□□□□□ -0.46
CDX1P47902 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
CDX1P47902 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms