Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL161932.2-201ENST00000435436 679 ntBASIC13.79□□□□□ -0.2
COL5A1P20908 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 AC093826.1-201ENST00000508655 993 ntBASIC13.79□□□□□ -0.2
COL5A1P20908 RNA5SP406-201ENST00000516106 112 ntBASIC13.79□□□□□ -0.2
COL5A1P20908 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
COL5A1P20908 AC013553.1-201ENST00000560906 267 ntBASIC13.79□□□□□ -0.2
COL5A1P20908 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC13.79□□□□□ -0.2
COL5A1P20908 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 AC006483.2-201ENST00000609813 515 ntBASIC13.79□□□□□ -0.2
COL5A1P20908 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.79□□□□□ -0.2
COL5A1P20908 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
COL5A1P20908 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.79□□□□□ -0.2
COL5A1P20908 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.79□□□□□ -0.2
COL5A1P20908 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
COL5A1P20908 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 AC021305.1-201ENST00000520656 1514 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 RNVU1-8-201ENST00000364272 125 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC13.78□□□□□ -0.2
COL5A1P20908 KRT18P46-201ENST00000435568 1279 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 ALG1L3P-201ENST00000503331 765 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 RPS23-207ENST00000511844 530 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 FAM86B3P-203ENST00000523992 854 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 THY1-209ENST00000580275 578 ntTSL 3 BASIC13.78□□□□□ -0.2
COL5A1P20908 AC012073.1-201ENST00000606114 1108 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 CICP14-201ENST00000629111 2732 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL5A1P20908 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 RN7SL788P-201ENST00000460504 316 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 MT2A-202ENST00000561491 581 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 AC005586.2-201ENST00000563946 837 ntBASIC13.78□□□□□ -0.2
COL5A1P20908 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL5A1P20908 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL5A1P20908 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL5A1P20908 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
COL5A1P20908 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms