Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KRT8P31-201ENST00000504812 1408 ntBASIC15.14■□□□□ 0.01
HMGA1P17096 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
HMGA1P17096 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGA1P17096 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGA1P17096 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HMGA1P17096 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
HMGA1P17096 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
HMGA1P17096 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGA1P17096 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGA1P17096 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGA1P17096 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGA1P17096 AL161932.2-201ENST00000435436 679 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 AP000358.1-201ENST00000456260 156 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 NDUFS6P1-201ENST00000485187 316 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HMGA1P17096 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
HMGA1P17096 AC005586.2-201ENST00000563946 837 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGA1P17096 SIGLEC18P-201ENST00000602271 909 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 AC138894.2-201ENST00000602838 371 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 AC103810.10-201ENST00000606504 343 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 AC073352.2-201ENST00000609385 439 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 AL591471.1-201ENST00000621855 229 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 KRT18P9-201ENST00000604826 1300 ntBASIC15.13■□□□□ 0.01
HMGA1P17096 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGA1P17096 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGA1P17096 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGA1P17096 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HMGA1P17096 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGA1P17096 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HMGA1P17096 AL583805.1-201ENST00000391389 531 ntBASIC15.12■□□□□ 0.01
HMGA1P17096 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 RPS9P1-201ENST00000419943 583 ntBASIC15.12■□□□□ 0.01
HMGA1P17096 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.12■□□□□ 0.01
HMGA1P17096 DUTP3-201ENST00000450025 415 ntBASIC15.12■□□□□ 0.01
HMGA1P17096 MPRIPP1-201ENST00000452433 1089 ntBASIC15.12■□□□□ 0.01
HMGA1P17096 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms