Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP2Q9UDT6 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 RN7SKP230-201ENST00000365642 335 ntBASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 KRT8P13-201ENST00000463294 1010 ntBASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP2Q9UDT6 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 AL138725.1-201ENST00000407347 1314 ntBASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 AC103810.3-201ENST00000583567 96 ntBASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP2Q9UDT6 AL358472.3-201ENST00000608147 415 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms