Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC88CQ9P219 AL138725.1-201ENST00000407347 1314 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 HLA-J-204ENST00000495278 958 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AL451050.2-201ENST00000606967 682 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC027601.5-201ENST00000624065 2482 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 COX5BP1-201ENST00000507622 393 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 OR10B1P-201ENST00000601666 907 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 AC004899.1-201ENST00000424687 1714 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.1□□□□□ -0.15
CCDC88CQ9P219 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC88CQ9P219 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 NORAD-201ENST00000565493 5339 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 RNMTL1P1-201ENST00000454103 560 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 RN7SL48P-201ENST00000579283 293 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 RN7SL574P-201ENST00000581512 297 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 EEF1DP1-201ENST00000585891 896 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 AP001002.3-201ENST00000623482 206 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 AC002472.3-201ENST00000640124 621 ntBASIC14.09□□□□□ -0.15
CCDC88CQ9P219 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC88CQ9P219 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms