Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 RPS2P32-201ENST00000439199 892 ntBASIC15.72■□□□□ 0.11
CISHQ9NSE2 Z93015.1-201ENST00000451718 390 ntBASIC15.72■□□□□ 0.11
CISHQ9NSE2 RPL13AP20-201ENST00000459725 609 ntBASIC15.72■□□□□ 0.11
CISHQ9NSE2 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 AC132192.2-201ENST00000596206 1147 ntBASIC15.72■□□□□ 0.11
CISHQ9NSE2 AC009955.4-201ENST00000597192 544 ntBASIC15.72■□□□□ 0.11
CISHQ9NSE2 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 AC026748.1-201ENST00000624349 3251 ntBASIC15.72■□□□□ 0.11
CISHQ9NSE2 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CISHQ9NSE2 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CISHQ9NSE2 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 RPSAP36-202ENST00000494591 1261 ntBASIC15.71■□□□□ 0.11
CISHQ9NSE2 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.71■□□□□ 0.11
CISHQ9NSE2 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CISHQ9NSE2 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CISHQ9NSE2 OR2I1P-210ENST00000642037 4691 ntBASIC15.71■□□□□ 0.1
CISHQ9NSE2 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
CISHQ9NSE2 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.71■□□□□ 0.1
CISHQ9NSE2 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CISHQ9NSE2 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CISHQ9NSE2 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.71■□□□□ 0.1
CISHQ9NSE2 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CISHQ9NSE2 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CISHQ9NSE2 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
CISHQ9NSE2 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CISHQ9NSE2 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CISHQ9NSE2 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CISHQ9NSE2 AC126755.1-201ENST00000525846 6405 ntBASIC15.7■□□□□ 0.1
CISHQ9NSE2 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CISHQ9NSE2 AC009093.10-201ENST00000641956 1442 ntBASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms