Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
RAB40CQ96S21 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RAB40CQ96S21 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RAB40CQ96S21 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
RAB40CQ96S21 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RAB40CQ96S21 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
RAB40CQ96S21 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RAB40CQ96S21 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RAB40CQ96S21 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 AC254562.1-201ENST00000417586 456 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 AL080243.2-201ENST00000418783 582 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 SNHG9-202ENST00000564014 471 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 AC134684.3-201ENST00000641758 218 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 AC093525.8-201ENST00000624099 1342 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 COL6A4P2-202ENST00000504443 2753 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 AL356585.2-201ENST00000625078 2396 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
RAB40CQ96S21 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RAB40CQ96S21 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.05□□□□□ -0.48
RAB40CQ96S21 AC090643.2-201ENST00000623442 2029 ntBASIC12.04□□□□□ -0.48
RAB40CQ96S21 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 KRT8P14-201ENST00000414254 1442 ntBASIC12.04□□□□□ -0.48
RAB40CQ96S21 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.04□□□□□ -0.48
RAB40CQ96S21 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RAB40CQ96S21 MIR1233-2-201ENST00000408138 82 ntBASIC12.04□□□□□ -0.48
RAB40CQ96S21 MIR1233-1-201ENST00000408722 82 ntBASIC12.04□□□□□ -0.48
RAB40CQ96S21 AL627223.1-201ENST00000416693 442 ntBASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms