Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 PRAL-201ENST00000624952 3286 ntBASIC15.91■□□□□ 0.14
LRCH3Q96II8 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRCH3Q96II8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.91■□□□□ 0.14
LRCH3Q96II8 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.91■□□□□ 0.14
LRCH3Q96II8 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.91■□□□□ 0.14
LRCH3Q96II8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 AC011840.2-201ENST00000563063 1520 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 AC006058.4-201ENST00000624016 1670 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 EIF2S2P5-201ENST00000457635 968 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 AC006122.1-201ENST00000493323 440 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 AC138701.2-201ENST00000553634 226 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 RN7SL357P-201ENST00000581065 298 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 MIR3188-201ENST00000583494 85 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 AC254633.1-201ENST00000606790 345 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 AC006483.2-201ENST00000609813 515 ntBASIC15.9■□□□□ 0.14
LRCH3Q96II8 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRCH3Q96II8 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.9■□□□□ 0.14
LRCH3Q96II8 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 MARK2P16-201ENST00000605714 1723 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 AC013268.4-201ENST00000637413 2228 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 RNA5SP359-201ENST00000364838 113 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 OLA1P2-201ENST00000395519 1264 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 AC068867.1-201ENST00000559855 150 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 AP001542.1-201ENST00000591314 200 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 AP002414.2-201ENST00000591780 3365 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms