Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AL118508.1-201ENST00000613502 2345 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC232323.1-201ENST00000540724 2099 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC092135.3-201ENST00000624151 1846 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 CDCA4P4-201ENST00000435216 680 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 ALG1L7P-201ENST00000502317 768 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC095040.1-201ENST00000513286 675 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC007250.1-201ENST00000608934 338 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 DKFZP434H168-201ENST00000567381 1905 ntBASIC9.99□□□□□ -0.81
CSMD3Q7Z407 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 LCK-206ENST00000373564 2137 ntTSL 5 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC9.99□□□□□ -0.81
CSMD3Q7Z407 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC073869.2-201ENST00000417338 1026 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RNLS-203ENST00000437752 525 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 DLK1-205ENST00000556051 469 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 SF1-209ENST00000433274 2317 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 PPT1-215ENST00000641471 2368 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 HIST1H2APS2-201ENST00000454426 370 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC087203.1-201ENST00000532111 1181 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC020931.1-201ENST00000589622 1346 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms