Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RHBDL3P58872 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RHBDL3P58872 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC17.23■□□□□ 0.35
RHBDL3P58872 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AP000356.3-201ENST00000382243 753 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 AL592076.1-201ENST00000424448 303 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AC253536.4-201ENST00000440539 267 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 LDHBP1-201ENST00000455730 1119 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AC005586.2-201ENST00000563946 837 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 RPL17P45-201ENST00000586289 509 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AC007326.1-201ENST00000604539 458 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AP003419.4-201ENST00000616071 517 ntBASIC17.23■□□□□ 0.35
RHBDL3P58872 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.23■□□□□ 0.35
RHBDL3P58872 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RHBDL3P58872 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RHBDL3P58872 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
RHBDL3P58872 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC17.22■□□□□ 0.35
RHBDL3P58872 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.22■□□□□ 0.35
RHBDL3P58872 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 KRT8P1-201ENST00000557533 1207 ntBASIC17.22■□□□□ 0.35
RHBDL3P58872 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC17.22■□□□□ 0.35
RHBDL3P58872 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC17.22■□□□□ 0.35
RHBDL3P58872 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 AC007881.3-201ENST00000608897 607 ntBASIC17.22■□□□□ 0.35
RHBDL3P58872 MIR7845-201ENST00000618396 99 ntBASIC17.22■□□□□ 0.35
RHBDL3P58872 COX6A1P2-201ENST00000620597 330 ntBASIC17.22■□□□□ 0.35
RHBDL3P58872 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RHBDL3P58872 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RHBDL3P58872 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RHBDL3P58872 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RHBDL3P58872 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RHBDL3P58872 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RHBDL3P58872 BRD7P5-201ENST00000299197 1822 ntBASIC17.21■□□□□ 0.35
RHBDL3P58872 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RHBDL3P58872 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RHBDL3P58872 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms