Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
FOXA1P55317 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 MIR600HG-201ENST00000449175 5984 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 AC105206.1-202ENST00000314927 2368 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 AC009093.2-202ENST00000620513 2079 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 KHSRPP1-201ENST00000427983 1768 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 TCAM1P-207ENST00000485295 1537 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
FOXA1P55317 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXA1P55317 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXA1P55317 AL162726.2-201ENST00000438986 1017 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 MESTP3-201ENST00000503460 968 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 AL391280.1-201ENST00000506969 1062 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.31□□□□□ -0.12
FOXA1P55317 RN7SL204P-201ENST00000582831 262 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.31□□□□□ -0.12
FOXA1P55317 GPALPP1-207ENST00000611650 899 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXA1P55317 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
FOXA1P55317 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 CICP17-201ENST00000418553 2377 ntBASIC14.31□□□□□ -0.12
FOXA1P55317 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA1P55317 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA1P55317 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA1P55317 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA1P55317 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA1P55317 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
FOXA1P55317 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
FOXA1P55317 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA1P55317 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms