Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
LIMK1P53667 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.55□□□□□ -0.08
LIMK1P53667 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
LIMK1P53667 RN7SL81P-201ENST00000493781 261 ntBASIC14.55□□□□□ -0.08
LIMK1P53667 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC14.55□□□□□ -0.08
LIMK1P53667 TMCO5B-205ENST00000530020 894 ntBASIC14.55□□□□□ -0.08
LIMK1P53667 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.55□□□□□ -0.08
LIMK1P53667 NUDT4P2-201ENST00000578341 546 ntBASIC14.55□□□□□ -0.08
LIMK1P53667 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC14.55□□□□□ -0.08
LIMK1P53667 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LIMK1P53667 MEG3_2.1-201ENST00000611456 105 ntBASIC14.55□□□□□ -0.08
LIMK1P53667 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.55□□□□□ -0.08
LIMK1P53667 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LIMK1P53667 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.55□□□□□ -0.08
LIMK1P53667 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.55□□□□□ -0.08
LIMK1P53667 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 AC244394.1-201ENST00000435000 1665 ntBASIC14.55□□□□□ -0.08
LIMK1P53667 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMK1P53667 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
LIMK1P53667 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
LIMK1P53667 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 MIR557-201ENST00000385239 98 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMK1P53667 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMK1P53667 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMK1P53667 NDUFS6P1-201ENST00000485187 316 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMK1P53667 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.54□□□□□ -0.08
LIMK1P53667 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.54□□□□□ -0.08
LIMK1P53667 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
LIMK1P53667 DGAT2L7P-201ENST00000602462 744 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 AL157813.1-201ENST00000612996 587 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 Z98259.2-201ENST00000641583 609 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 AC090502.4-201ENST00000551714 1386 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMK1P53667 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMK1P53667 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
LIMK1P53667 PKD1P5-201ENST00000532415 10291 ntBASIC14.54□□□□□ -0.08
LIMK1P53667 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms