Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.2□□□□□ -0.46
CDX1P47902 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.2□□□□□ -0.46
CDX1P47902 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
CDX1P47902 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
CDX1P47902 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.2□□□□□ -0.46
CDX1P47902 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.2□□□□□ -0.46
CDX1P47902 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
CDX1P47902 AC152010.1-201ENST00000415779 2006 ntBASIC12.2□□□□□ -0.46
CDX1P47902 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CDX1P47902 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.19□□□□□ -0.46
CDX1P47902 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 RPL13AP25-201ENST00000484130 612 ntBASIC12.19□□□□□ -0.46
CDX1P47902 ELK1P1-201ENST00000485699 580 ntBASIC12.19□□□□□ -0.46
CDX1P47902 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.19□□□□□ -0.46
CDX1P47902 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.19□□□□□ -0.46
CDX1P47902 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CDX1P47902 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 CLK3P2-201ENST00000427566 1453 ntBASIC12.19□□□□□ -0.46
CDX1P47902 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
CDX1P47902 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CDX1P47902 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CDX1P47902 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.18□□□□□ -0.46
CDX1P47902 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
CDX1P47902 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CDX1P47902 AL442647.2-201ENST00000429864 857 ntBASIC12.18□□□□□ -0.46
CDX1P47902 GSAP-205ENST00000430584 600 ntTSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms