Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 INE2-201ENST00000630399 1874 ntBASIC16.39■□□□□ 0.21
TPM1P09493 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TPM1P09493 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TPM1P09493 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM1P09493 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TPM1P09493 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.38■□□□□ 0.21
TPM1P09493 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.38■□□□□ 0.21
TPM1P09493 NUS1P3-201ENST00000423502 862 ntBASIC16.38■□□□□ 0.21
TPM1P09493 AL353779.1-201ENST00000434793 351 ntBASIC16.38■□□□□ 0.21
TPM1P09493 CNN2P2-201ENST00000443536 909 ntBASIC16.38■□□□□ 0.21
TPM1P09493 CNN2P3-201ENST00000450201 906 ntBASIC16.38■□□□□ 0.21
TPM1P09493 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.38■□□□□ 0.21
TPM1P09493 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 AC044860.1-202ENST00000559481 777 ntBASIC16.38■□□□□ 0.21
TPM1P09493 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.38■□□□□ 0.21
TPM1P09493 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
TPM1P09493 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.38■□□□□ 0.21
TPM1P09493 AL596442.2-201ENST00000610240 980 ntBASIC16.38■□□□□ 0.21
TPM1P09493 AL136317.3-201ENST00000618497 906 ntBASIC16.38■□□□□ 0.21
TPM1P09493 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM1P09493 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM1P09493 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
TPM1P09493 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 TCAM1P-207ENST00000485295 1537 ntBASIC16.37■□□□□ 0.21
TPM1P09493 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TPM1P09493 AC211486.1-202ENST00000416371 468 ntBASIC16.37■□□□□ 0.21
TPM1P09493 AC211476.1-201ENST00000503899 468 ntBASIC16.37■□□□□ 0.21
TPM1P09493 GAPDHP40-201ENST00000505218 1006 ntBASIC16.37■□□□□ 0.21
TPM1P09493 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.37■□□□□ 0.21
TPM1P09493 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.37■□□□□ 0.21
TPM1P09493 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
TPM1P09493 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 AC090505.1-201ENST00000430515 1834 ntBASIC16.37■□□□□ 0.21
TPM1P09493 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 AC087499.5-201ENST00000452760 1342 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms