Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.32□□□□□ -0.12
CLDN9O95484 RN7SL752P-201ENST00000463779 287 ntBASIC14.32□□□□□ -0.12
CLDN9O95484 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN9O95484 AC106760.1-201ENST00000508690 800 ntBASIC14.32□□□□□ -0.12
CLDN9O95484 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN9O95484 AC103988.2-201ENST00000561804 725 ntBASIC14.32□□□□□ -0.12
CLDN9O95484 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN9O95484 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN9O95484 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLDN9O95484 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CLDN9O95484 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLDN9O95484 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CLDN9O95484 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 HMGN1P19-201ENST00000436976 333 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 AC007389.4-201ENST00000454674 793 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.31□□□□□ -0.12
CLDN9O95484 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 AP001889.1-201ENST00000525414 633 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.31□□□□□ -0.12
CLDN9O95484 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 AP001002.3-201ENST00000623482 206 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 AC012617.1-204ENST00000586340 2305 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 AC139712.1-201ENST00000378256 1875 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 AP000593.2-201ENST00000542775 1433 ntBASIC14.31□□□□□ -0.12
CLDN9O95484 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN9O95484 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.31□□□□□ -0.12
CLDN9O95484 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN9O95484 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.31□□□□□ -0.12
CLDN9O95484 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLDN9O95484 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms