Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
CDKL5O76039 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.19■□□□□ 0.34
CDKL5O76039 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 SNX18-202ENST00000343017 3140 ntBASIC17.19■□□□□ 0.34
CDKL5O76039 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.19■□□□□ 0.34
CDKL5O76039 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.19■□□□□ 0.34
CDKL5O76039 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDKL5O76039 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.19■□□□□ 0.34
CDKL5O76039 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.19■□□□□ 0.34
CDKL5O76039 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.19■□□□□ 0.34
CDKL5O76039 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.19■□□□□ 0.34
CDKL5O76039 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.19■□□□□ 0.34
CDKL5O76039 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.19■□□□□ 0.34
CDKL5O76039 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.19■□□□□ 0.34
CDKL5O76039 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.19■□□□□ 0.34
CDKL5O76039 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 AHCYP2-201ENST00000430630 1300 ntBASIC17.19■□□□□ 0.34
CDKL5O76039 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDKL5O76039 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
CDKL5O76039 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CDKL5O76039 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
CDKL5O76039 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.18■□□□□ 0.34
CDKL5O76039 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.18■□□□□ 0.34
CDKL5O76039 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CDKL5O76039 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 GAPDHP21-201ENST00000450301 1010 ntBASIC17.18■□□□□ 0.34
CDKL5O76039 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.18■□□□□ 0.34
CDKL5O76039 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.18■□□□□ 0.34
CDKL5O76039 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.18■□□□□ 0.34
CDKL5O76039 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CDKL5O76039 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.18■□□□□ 0.34
CDKL5O76039 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.18■□□□□ 0.34
CDKL5O76039 AC008825.2-201ENST00000603374 718 ntBASIC17.18■□□□□ 0.34
CDKL5O76039 AC073413.1-201ENST00000603927 732 ntBASIC17.18■□□□□ 0.34
CDKL5O76039 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.18■□□□□ 0.34
CDKL5O76039 ZACNP1-201ENST00000612259 710 ntBASIC17.18■□□□□ 0.34
CDKL5O76039 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 AC215219.1-201ENST00000400706 1817 ntBASIC17.18■□□□□ 0.34
CDKL5O76039 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CDKL5O76039 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.18■□□□□ 0.34
CDKL5O76039 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDKL5O76039 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms