Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 AC005089.1-201ENST00000619486 2241 ntBASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 AC015688.4-201ENST00000580780 1647 ntBASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATG4BQ9Y4P1 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 KRT223P-202ENST00000449164 1292 ntBASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 ALG3P1-201ENST00000508806 1114 ntBASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 C2orf69P2-201ENST00000562032 1123 ntBASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 MIR4259-201ENST00000584466 101 ntBASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AP001002.3-201ENST00000623482 206 ntBASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AC002472.3-201ENST00000640124 621 ntBASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.02□□□□□ -0.17
ATG4BQ9Y4P1 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 SBF1P1-201ENST00000444527 5631 ntBASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 KRT8P4-201ENST00000509735 1454 ntBASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 AC006504.5-208ENST00000588784 2401 ntBASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4BQ9Y4P1 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms