Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 AC093726.1-201ENST00000608064 963 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 AP005019.2-201ENST00000615104 511 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 AC023511.2-201ENST00000618803 211 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 BEND3P1-201ENST00000421591 1944 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 SPDYE19P-201ENST00000338590 713 ntBASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 ACKR1-201ENST00000368121 1240 ntBASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC54Q8NEL0 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC136759.1-202ENST00000530858 2194 ntBASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SLC7A15P-201ENST00000424028 1363 ntBASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC092135.3-201ENST00000624151 1846 ntBASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms