Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 PMS2P2-201ENST00000425039 1128 ntBASIC16.87■□□□□ 0.29
ATL3Q6DD88 ACTG1P3-201ENST00000431775 1114 ntBASIC16.87■□□□□ 0.29
ATL3Q6DD88 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 TSPY16P-201ENST00000449843 468 ntBASIC16.87■□□□□ 0.29
ATL3Q6DD88 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 AC006538.3-201ENST00000612495 578 ntBASIC16.87■□□□□ 0.29
ATL3Q6DD88 AL033527.5-201ENST00000641382 801 ntBASIC16.87■□□□□ 0.29
ATL3Q6DD88 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 RN7SKP175-201ENST00000408472 289 ntBASIC16.86■□□□□ 0.29
ATL3Q6DD88 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 AC027237.1-201ENST00000560942 655 ntBASIC16.86■□□□□ 0.29
ATL3Q6DD88 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 AC132938.4-201ENST00000623835 848 ntBASIC16.86■□□□□ 0.29
ATL3Q6DD88 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 AC023794.5-201ENST00000564380 2157 ntBASIC16.86■□□□□ 0.29
ATL3Q6DD88 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ATL3Q6DD88 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATL3Q6DD88 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 AC011495.1-201ENST00000498085 584 ntBASIC16.85■□□□□ 0.29
ATL3Q6DD88 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 AC008494.3-201ENST00000606615 944 ntBASIC16.85■□□□□ 0.29
ATL3Q6DD88 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ATL3Q6DD88 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 AC009093.10-201ENST00000641956 1442 ntBASIC16.85■□□□□ 0.29
ATL3Q6DD88 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms