Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX1P28360 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX1P28360 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.62□□□□□ -0.23
MSX1P28360 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX1P28360 AC067750.1-201ENST00000608826 6545 ntBASIC13.62□□□□□ -0.23
MSX1P28360 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
MSX1P28360 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
MSX1P28360 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX1P28360 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX1P28360 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 RN7SKP230-201ENST00000365642 335 ntBASIC13.61□□□□□ -0.23
MSX1P28360 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 AC092506.1-202ENST00000401022 528 ntBASIC13.61□□□□□ -0.23
MSX1P28360 BTBD6P1-201ENST00000412176 1267 ntBASIC13.61□□□□□ -0.23
MSX1P28360 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX1P28360 AL691447.1-201ENST00000419456 387 ntBASIC13.61□□□□□ -0.23
MSX1P28360 CALR4P-201ENST00000431943 946 ntBASIC13.61□□□□□ -0.23
MSX1P28360 AC104306.2-201ENST00000451877 341 ntBASIC13.61□□□□□ -0.23
MSX1P28360 AL590640.2-201ENST00000457038 527 ntBASIC13.61□□□□□ -0.23
MSX1P28360 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX1P28360 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 AC131206.1-201ENST00000538078 1211 ntBASIC13.61□□□□□ -0.23
MSX1P28360 AL390728.6-201ENST00000566446 1246 ntBASIC13.61□□□□□ -0.23
MSX1P28360 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX1P28360 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 BX088702.1-201ENST00000610784 235 ntBASIC13.61□□□□□ -0.23
MSX1P28360 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX1P28360 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX1P28360 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
MSX1P28360 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX1P28360 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX1P28360 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
MSX1P28360 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.6□□□□□ -0.23
MSX1P28360 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX1P28360 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.6□□□□□ -0.23
MSX1P28360 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
MSX1P28360 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
MSX1P28360 RN7SKP175-201ENST00000408472 289 ntBASIC13.6□□□□□ -0.23
MSX1P28360 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX1P28360 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX1P28360 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.6□□□□□ -0.23
MSX1P28360 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MSX1P28360 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX1P28360 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX1P28360 COX5BP1-201ENST00000507622 393 ntBASIC13.6□□□□□ -0.23
MSX1P28360 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX1P28360 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX1P28360 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX1P28360 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms