Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FAAHP1-202ENST00000446499 1238 ntBASIC14.83□□□□□ -0.04
SHOX2O60902 AC009078.2-202ENST00000463353 338 ntBASIC14.83□□□□□ -0.04
SHOX2O60902 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.83□□□□□ -0.04
SHOX2O60902 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.83□□□□□ -0.04
SHOX2O60902 SLC25A6P4-201ENST00000586535 553 ntBASIC14.83□□□□□ -0.04
SHOX2O60902 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.83□□□□□ -0.04
SHOX2O60902 AC099522.2-201ENST00000607001 744 ntBASIC14.83□□□□□ -0.04
SHOX2O60902 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.83□□□□□ -0.04
SHOX2O60902 AC004840.1-201ENST00000636359 365 ntBASIC14.83□□□□□ -0.04
SHOX2O60902 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.83□□□□□ -0.04
SHOX2O60902 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.83□□□□□ -0.04
SHOX2O60902 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.83□□□□□ -0.04
SHOX2O60902 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.83□□□□□ -0.04
SHOX2O60902 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SHOX2O60902 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SHOX2O60902 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SHOX2O60902 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHOX2O60902 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SHOX2O60902 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 RARRES2P8-201ENST00000566335 367 ntBASIC14.82□□□□□ -0.04
SHOX2O60902 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.82□□□□□ -0.04
SHOX2O60902 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.82□□□□□ -0.04
SHOX2O60902 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
SHOX2O60902 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SHOX2O60902 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC14.82□□□□□ -0.04
SHOX2O60902 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.82□□□□□ -0.04
SHOX2O60902 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHOX2O60902 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC14.81□□□□□ -0.04
SHOX2O60902 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SHOX2O60902 SPDYE17-201ENST00000412399 783 ntBASIC14.81□□□□□ -0.04
SHOX2O60902 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.81□□□□□ -0.04
SHOX2O60902 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.81□□□□□ -0.04
SHOX2O60902 AC079776.4-201ENST00000511039 504 ntBASIC14.81□□□□□ -0.04
SHOX2O60902 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.81□□□□□ -0.04
SHOX2O60902 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.81□□□□□ -0.04
SHOX2O60902 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.81□□□□□ -0.04
SHOX2O60902 AL513190.1-201ENST00000621254 727 ntBASIC14.81□□□□□ -0.04
SHOX2O60902 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 AL021155.1-201ENST00000438808 2637 ntBASIC14.81□□□□□ -0.04
SHOX2O60902 HLA-A-201ENST00000376802 1334 ntBASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms