Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 VDAC1P1-201ENST00000439229 848 ntBASIC13.27□□□□□ -0.29
ZIC3O60481 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.27□□□□□ -0.29
ZIC3O60481 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.27□□□□□ -0.29
ZIC3O60481 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.27□□□□□ -0.29
ZIC3O60481 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.27□□□□□ -0.29
ZIC3O60481 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.27□□□□□ -0.29
ZIC3O60481 AC005962.1-201ENST00000584100 773 ntBASIC13.27□□□□□ -0.29
ZIC3O60481 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.27□□□□□ -0.29
ZIC3O60481 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.27□□□□□ -0.29
ZIC3O60481 AC244093.1-201ENST00000610837 814 ntBASIC13.27□□□□□ -0.29
ZIC3O60481 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
ZIC3O60481 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
ZIC3O60481 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.27□□□□□ -0.29
ZIC3O60481 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
ZIC3O60481 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
ZIC3O60481 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 AC140479.7-201ENST00000636301 2332 ntBASIC13.27□□□□□ -0.29
ZIC3O60481 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
ZIC3O60481 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
ZIC3O60481 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ZIC3O60481 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.26□□□□□ -0.29
ZIC3O60481 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.26□□□□□ -0.29
ZIC3O60481 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 HLA-J-204ENST00000495278 958 ntBASIC13.26□□□□□ -0.29
ZIC3O60481 SCARNA21-201ENST00000517026 139 ntBASIC13.26□□□□□ -0.29
ZIC3O60481 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 AC136759.1-202ENST00000530858 2194 ntBASIC13.26□□□□□ -0.29
ZIC3O60481 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
ZIC3O60481 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.26□□□□□ -0.29
ZIC3O60481 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 AP000346.4-201ENST00000614827 381 ntBASIC13.26□□□□□ -0.29
ZIC3O60481 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
ZIC3O60481 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.26□□□□□ -0.29
ZIC3O60481 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
ZIC3O60481 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
ZIC3O60481 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
ZIC3O60481 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ZIC3O60481 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
ZIC3O60481 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
ZIC3O60481 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
ZIC3O60481 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
ZIC3O60481 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms