Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 AC016700.1-201ENST00000429424 312 ntBASIC13.62□□□□□ -0.23
LRFN1Q9P244 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 IGHJ2P-201ENST00000454480 60 ntBASIC13.62□□□□□ -0.23
LRFN1Q9P244 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 AL136295.7-201ENST00000619226 1200 ntBASIC13.62□□□□□ -0.23
LRFN1Q9P244 AC004923.1-202ENST00000642106 209 ntBASIC13.62□□□□□ -0.23
LRFN1Q9P244 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.62□□□□□ -0.23
LRFN1Q9P244 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.62□□□□□ -0.23
LRFN1Q9P244 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LRFN1Q9P244 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 DPM3-202ENST00000368399 517 ntBASIC13.61□□□□□ -0.23
LRFN1Q9P244 MIR769-201ENST00000390225 118 ntBASIC13.61□□□□□ -0.23
LRFN1Q9P244 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 AL008707.1-201ENST00000422498 534 ntBASIC13.61□□□□□ -0.23
LRFN1Q9P244 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ALG3P1-201ENST00000508806 1114 ntBASIC13.61□□□□□ -0.23
LRFN1Q9P244 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 AC013355.1-201ENST00000562625 723 ntBASIC13.61□□□□□ -0.23
LRFN1Q9P244 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 AC073347.1-201ENST00000421633 2643 ntBASIC13.61□□□□□ -0.23
LRFN1Q9P244 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LRFN1Q9P244 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
LRFN1Q9P244 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms