Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 PTPRVP-205ENST00000641549 5067 ntBASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 UPF3AP3-201ENST00000420996 769 ntBASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 CNN2P11-201ENST00000429351 262 ntBASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 AL645728.2-202ENST00000641679 227 ntBASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 AL109936.8-201ENST00000641772 604 ntBASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 DGCR9-201ENST00000609630 2415 ntBASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CHMP1AQ9HD42 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC138969.3-201ENST00000546612 1459 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC138932.2-201ENST00000548268 1459 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC126755.4-201ENST00000549796 1459 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 PCDHA5-203ENST00000614258 4248 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms