Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 PRSS3P1-201ENST00000503996 742 ntBASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC087203.1-201ENST00000532111 1181 ntBASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 COQ4-204ENST00000608951 781 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 USP39-220ENST00000613444 2161 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC018529.2-202ENST00000611482 3087 ntBASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 LINP1-201ENST00000417112 917 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 KRT18P4-201ENST00000422599 1288 ntBASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 GOLGA2P7-209ENST00000560408 745 ntBASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 MIR6074-201ENST00000612054 107 ntBASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 AC015909.5-201ENST00000624336 2266 ntBASIC18.48■□□□□ 0.55
SHANK3Q9BYB0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 OR10N1P-201ENST00000392758 869 ntBASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 PSAT1P2-201ENST00000426107 972 ntBASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC063952.3-201ENST00000467756 308 ntBASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC022532.1-201ENST00000624563 1728 ntBASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC011498.7-201ENST00000624986 2027 ntBASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AP000769.1-203ENST00000637245 208 ntBASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms