Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TLE1P1-201ENST00000422965 589 ntBASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 MEIS3P1-201ENST00000495167 958 ntBASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 AC107373.2-201ENST00000607735 490 ntBASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC28BQ9BUN5 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AL139400.1-201ENST00000366220 510 ntBASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AL596442.2-201ENST00000610240 980 ntBASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AC090643.2-201ENST00000623442 2029 ntBASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AC073592.8-201ENST00000624126 511 ntBASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms