Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HPS3Q969F9 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.41■□□□□ 0.22
HPS3Q969F9 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.41■□□□□ 0.22
HPS3Q969F9 SNX29P1-201ENST00000548357 1007 ntBASIC16.41■□□□□ 0.22
HPS3Q969F9 CR383656.12-201ENST00000549567 513 ntBASIC16.41■□□□□ 0.22
HPS3Q969F9 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.41■□□□□ 0.22
HPS3Q969F9 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.41■□□□□ 0.22
HPS3Q969F9 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.41■□□□□ 0.22
HPS3Q969F9 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.41■□□□□ 0.22
HPS3Q969F9 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 AP001002.3-201ENST00000623482 206 ntBASIC16.41■□□□□ 0.22
HPS3Q969F9 AC006453.4-201ENST00000636949 1252 ntBASIC16.41■□□□□ 0.22
HPS3Q969F9 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.41■□□□□ 0.22
HPS3Q969F9 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HPS3Q969F9 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HPS3Q969F9 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HPS3Q969F9 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HPS3Q969F9 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.41■□□□□ 0.22
HPS3Q969F9 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HPS3Q969F9 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HPS3Q969F9 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.4■□□□□ 0.22
HPS3Q969F9 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.4■□□□□ 0.22
HPS3Q969F9 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.4■□□□□ 0.22
HPS3Q969F9 AC079776.1-201ENST00000401540 1152 ntBASIC16.4■□□□□ 0.22
HPS3Q969F9 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 AC004945.1-201ENST00000416738 983 ntBASIC16.4■□□□□ 0.22
HPS3Q969F9 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 AC244107.1-201ENST00000442033 332 ntBASIC16.4■□□□□ 0.22
HPS3Q969F9 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.4■□□□□ 0.22
HPS3Q969F9 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.4■□□□□ 0.22
HPS3Q969F9 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.4■□□□□ 0.22
HPS3Q969F9 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.4■□□□□ 0.22
HPS3Q969F9 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HPS3Q969F9 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HPS3Q969F9 AL354989.2-201ENST00000435838 1540 ntBASIC16.4■□□□□ 0.22
HPS3Q969F9 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HPS3Q969F9 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
HPS3Q969F9 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HPS3Q969F9 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.39■□□□□ 0.21
HPS3Q969F9 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.39■□□□□ 0.21
HPS3Q969F9 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
HPS3Q969F9 AC006001.1-201ENST00000325130 474 ntBASIC16.39■□□□□ 0.21
HPS3Q969F9 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.39■□□□□ 0.21
HPS3Q969F9 AC005034.1-201ENST00000426657 489 ntBASIC16.39■□□□□ 0.21
HPS3Q969F9 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.39■□□□□ 0.21
HPS3Q969F9 AC026954.1-201ENST00000429771 1293 ntBASIC16.39■□□□□ 0.21
HPS3Q969F9 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.39■□□□□ 0.21
HPS3Q969F9 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.39■□□□□ 0.21
HPS3Q969F9 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.39■□□□□ 0.21
HPS3Q969F9 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HPS3Q969F9 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.39■□□□□ 0.21
HPS3Q969F9 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.39■□□□□ 0.21
HPS3Q969F9 KRT17P8-201ENST00000540749 863 ntBASIC16.39■□□□□ 0.21
HPS3Q969F9 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms