Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC16.89■□□□□ 0.29
ERCC4Q92889 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ERCC4Q92889 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC16.88■□□□□ 0.29
ERCC4Q92889 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ERCC4Q92889 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ERCC4Q92889 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 RNU1-114P-201ENST00000365297 166 ntBASIC16.88■□□□□ 0.29
ERCC4Q92889 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.88■□□□□ 0.29
ERCC4Q92889 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.88■□□□□ 0.29
ERCC4Q92889 AC005498.2-205ENST00000593218 784 ntBASIC16.88■□□□□ 0.29
ERCC4Q92889 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.88■□□□□ 0.29
ERCC4Q92889 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.88■□□□□ 0.29
ERCC4Q92889 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.88■□□□□ 0.29
ERCC4Q92889 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
ERCC4Q92889 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ERCC4Q92889 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.87■□□□□ 0.29
ERCC4Q92889 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ERCC4Q92889 TET3-201ENST00000305799 5174 ntTSL 5 BASIC16.87■□□□□ 0.29
ERCC4Q92889 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.87■□□□□ 0.29
ERCC4Q92889 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ERCC4Q92889 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.87■□□□□ 0.29
ERCC4Q92889 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.87■□□□□ 0.29
ERCC4Q92889 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
ERCC4Q92889 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.87■□□□□ 0.29
ERCC4Q92889 AC027796.2-201ENST00000575326 344 ntBASIC16.87■□□□□ 0.29
ERCC4Q92889 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.87■□□□□ 0.29
ERCC4Q92889 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
ERCC4Q92889 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.87■□□□□ 0.29
ERCC4Q92889 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ERCC4Q92889 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.87■□□□□ 0.29
ERCC4Q92889 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ERCC4Q92889 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.86■□□□□ 0.29
ERCC4Q92889 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ERCC4Q92889 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.86■□□□□ 0.29
ERCC4Q92889 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.86■□□□□ 0.29
ERCC4Q92889 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
ERCC4Q92889 AC016397.2-201ENST00000624848 1985 ntBASIC16.86■□□□□ 0.29
ERCC4Q92889 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ERCC4Q92889 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms