Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 AL442647.2-201ENST00000429864 857 ntBASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 CHCHD2P3-201ENST00000603038 451 ntBASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 AC099568.2-201ENST00000609194 695 ntBASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 GPALPP1-207ENST00000611650 899 ntBASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 AC007541.1-201ENST00000570282 1469 ntBASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.3□□□□□ -0.12
CLHC1Q8NHS4 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 SALL4P5-201ENST00000419001 1760 ntBASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AC092135.3-201ENST00000624151 1846 ntBASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 RNA5SP421-201ENST00000516864 134 ntBASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AC004466.1-201ENST00000599515 1080 ntBASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AC005252.2-201ENST00000624630 1141 ntBASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms