Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 SLC7A15P-201ENST00000424028 1363 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AC012508.2-201ENST00000567613 1472 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 TARDBPP1-201ENST00000442013 1203 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MYCLP2-201ENST00000449268 967 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 LDHBP1-201ENST00000455730 1119 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 U62317.3-201ENST00000608319 855 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 KRT8P12-202ENST00000472924 1397 ntBASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.43□□□□□ -0.42
PDLIM3Q53GG5 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms