Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 AC090505.1-201ENST00000430515 1834 ntBASIC13.39□□□□□ -0.27
SUMO3P55854 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.38□□□□□ -0.27
SUMO3P55854 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.38□□□□□ -0.27
SUMO3P55854 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.38□□□□□ -0.27
SUMO3P55854 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
SUMO3P55854 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.38□□□□□ -0.27
SUMO3P55854 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 AC015818.8-201ENST00000587907 1519 ntBASIC13.38□□□□□ -0.27
SUMO3P55854 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SUMO3P55854 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SUMO3P55854 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.37□□□□□ -0.27
SUMO3P55854 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SUMO3P55854 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.37□□□□□ -0.27
SUMO3P55854 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SUMO3P55854 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
SUMO3P55854 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.37□□□□□ -0.27
SUMO3P55854 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.37□□□□□ -0.27
SUMO3P55854 AP001267.2-201ENST00000532619 2086 ntBASIC13.37□□□□□ -0.27
SUMO3P55854 AC005912.2-201ENST00000619492 2400 ntBASIC13.37□□□□□ -0.27
SUMO3P55854 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SUMO3P55854 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.37□□□□□ -0.27
SUMO3P55854 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms