Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
BRCA1P38398 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BRCA1P38398 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC17.33■□□□□ 0.37
BRCA1P38398 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BRCA1P38398 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC17.33■□□□□ 0.37
BRCA1P38398 AC064801.2-201ENST00000625052 1303 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BRCA1P38398 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
BRCA1P38398 KRT18P33-201ENST00000398525 1043 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 AHCYP3-201ENST00000420053 1279 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 TPT1P6-201ENST00000458298 514 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC17.33■□□□□ 0.37
BRCA1P38398 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC17.33■□□□□ 0.37
BRCA1P38398 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC17.33■□□□□ 0.37
BRCA1P38398 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC17.33■□□□□ 0.37
BRCA1P38398 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC17.33■□□□□ 0.37
BRCA1P38398 SORD2P-201ENST00000558556 1069 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 AC106782.5-201ENST00000616011 337 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC17.33■□□□□ 0.37
BRCA1P38398 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
BRCA1P38398 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BRCA1P38398 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
BRCA1P38398 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC17.33■□□□□ 0.36
BRCA1P38398 SHMT1P1-201ENST00000419974 1312 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 LINC00115-201ENST00000473798 1317 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BRCA1P38398 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC17.33■□□□□ 0.36
BRCA1P38398 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 B9D1-206ENST00000461069 923 ntTSL 2 BASIC17.33■□□□□ 0.36
BRCA1P38398 RN7SL173P-201ENST00000461853 292 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 AC099328.1-201ENST00000498809 1030 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 TBC1D3P6-201ENST00000505954 962 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC17.33■□□□□ 0.36
BRCA1P38398 AC005586.2-201ENST00000563946 837 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 RN7SL440P-201ENST00000577855 343 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC17.33■□□□□ 0.36
BRCA1P38398 AL512324.3-201ENST00000619383 882 ntBASIC17.33■□□□□ 0.36
BRCA1P38398 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BRCA1P38398 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
BRCA1P38398 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC17.32■□□□□ 0.36
BRCA1P38398 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 TMBIM7P-203ENST00000641617 1718 ntBASIC17.32■□□□□ 0.36
BRCA1P38398 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC17.32■□□□□ 0.36
BRCA1P38398 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
BRCA1P38398 AL356000.1-201ENST00000441073 1238 ntBASIC17.32■□□□□ 0.36
BRCA1P38398 AC133141.1-201ENST00000443015 339 ntBASIC17.32■□□□□ 0.36
BRCA1P38398 RN7SL684P-201ENST00000465665 294 ntBASIC17.32■□□□□ 0.36
BRCA1P38398 AC147876.1-201ENST00000504408 322 ntBASIC17.32■□□□□ 0.36
BRCA1P38398 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC17.32■□□□□ 0.36
BRCA1P38398 AL031673.1-201ENST00000611460 466 ntBASIC17.32■□□□□ 0.36
BRCA1P38398 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.32■□□□□ 0.36
BRCA1P38398 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BRCA1P38398 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.31■□□□□ 0.36
BRCA1P38398 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
BRCA1P38398 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
BRCA1P38398 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC17.31■□□□□ 0.36
BRCA1P38398 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC17.31■□□□□ 0.36
BRCA1P38398 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.31■□□□□ 0.36
BRCA1P38398 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC17.31■□□□□ 0.36
BRCA1P38398 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC17.31■□□□□ 0.36
BRCA1P38398 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.31■□□□□ 0.36
BRCA1P38398 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.31■□□□□ 0.36
BRCA1P38398 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms