Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS2P33552 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 FAM155A-201ENST00000375915 8503 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CKS2P33552 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC10.96□□□□□ -0.65
CKS2P33552 AL135744.1-201ENST00000565098 629 ntBASIC10.96□□□□□ -0.65
CKS2P33552 AP002472.1-201ENST00000577490 586 ntBASIC10.96□□□□□ -0.65
CKS2P33552 TBCB-205ENST00000585746 875 ntTSL 3 BASIC10.96□□□□□ -0.65
CKS2P33552 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS2P33552 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC10.96□□□□□ -0.65
CKS2P33552 AC099522.2-201ENST00000607001 744 ntBASIC10.96□□□□□ -0.65
CKS2P33552 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
CKS2P33552 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.66
CKS2P33552 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC10.96□□□□□ -0.66
CKS2P33552 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC10.96□□□□□ -0.66
CKS2P33552 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC10.96□□□□□ -0.66
CKS2P33552 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 AC111170.3-201ENST00000624282 2464 ntBASIC10.96□□□□□ -0.66
CKS2P33552 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC10.96□□□□□ -0.66
CKS2P33552 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC10.96□□□□□ -0.66
CKS2P33552 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC10.96□□□□□ -0.66
CKS2P33552 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
CKS2P33552 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CKS2P33552 AL365181.3-201ENST00000605886 3222 ntBASIC10.96□□□□□ -0.66
CKS2P33552 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC10.95□□□□□ -0.66
CKS2P33552 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CKS2P33552 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC10.95□□□□□ -0.66
CKS2P33552 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
CKS2P33552 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CKS2P33552 CROT-203ENST00000419147 2959 ntTSL 2 BASIC10.95□□□□□ -0.66
CKS2P33552 AC114271.1-201ENST00000612689 2813 ntBASIC10.95□□□□□ -0.66
CKS2P33552 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC10.95□□□□□ -0.66
CKS2P33552 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CKS2P33552 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CKS2P33552 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms