Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL451050.2-201ENST00000606967 682 ntBASIC16.88■□□□□ 0.29
SMARCA1P28370 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 AC064801.2-201ENST00000625052 1303 ntBASIC16.88■□□□□ 0.29
SMARCA1P28370 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SMARCA1P28370 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 AP001267.2-201ENST00000532619 2086 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
SMARCA1P28370 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SMARCA1P28370 KRT18P36-201ENST00000411618 1276 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 AC016700.1-201ENST00000429424 312 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 AC078875.1-201ENST00000431907 724 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.87■□□□□ 0.29
SMARCA1P28370 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.87■□□□□ 0.29
SMARCA1P28370 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 MIR6787-201ENST00000616675 61 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SMARCA1P28370 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.87■□□□□ 0.29
SMARCA1P28370 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
SMARCA1P28370 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 FAM45BP-202ENST00000592932 1624 ntBASIC16.87■□□□□ 0.29
SMARCA1P28370 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.87■□□□□ 0.29
SMARCA1P28370 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SMARCA1P28370 LINC00552-201ENST00000625151 2579 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SMARCA1P28370 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 AC106881.1-201ENST00000605849 3329 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.86■□□□□ 0.29
SMARCA1P28370 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SMARCA1P28370 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.86■□□□□ 0.29
SMARCA1P28370 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 AC022217.1-201ENST00000521069 738 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 AC138649.2-201ENST00000615886 705 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 AC100757.4-201ENST00000626934 759 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 TUBBP5-203ENST00000508529 1334 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 RN7SL832P-201ENST00000607781 1756 ntBASIC16.86■□□□□ 0.29
SMARCA1P28370 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.86■□□□□ 0.29
SMARCA1P28370 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.86■□□□□ 0.29
SMARCA1P28370 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms