Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NALT1-202ENST00000450304 437 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A3P12111 OARD1-214ENST00000486443 764 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A3P12111 RPSAP70-201ENST00000504462 864 ntBASIC14.84□□□□□ -0.03
COL6A3P12111 MIR4309-201ENST00000582498 83 ntBASIC14.84□□□□□ -0.03
COL6A3P12111 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A3P12111 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 LINC00554-201ENST00000564841 3011 ntBASIC14.84□□□□□ -0.03
COL6A3P12111 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A3P12111 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 NLK-203ENST00000582037 1503 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
COL6A3P12111 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 AC005011.1-201ENST00000455206 210 ntBASIC14.84□□□□□ -0.03
COL6A3P12111 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A3P12111 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A3P12111 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A3P12111 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A3P12111 OR10K2-201ENST00000314902 939 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
COL6A3P12111 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A3P12111 PRRX2-AS1-201ENST00000440413 429 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A3P12111 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.83□□□□□ -0.03
COL6A3P12111 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A3P12111 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A3P12111 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A3P12111 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
COL6A3P12111 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A3P12111 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A3P12111 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
COL6A3P12111 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
COL6A3P12111 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 RHOC-205ENST00000369636 786 ntTSL 2 BASIC14.83□□□□□ -0.04
COL6A3P12111 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A3P12111 COG6-212ENST00000630730 186 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 CDIPT-AS1-203ENST00000638164 713 ntBASIC14.83□□□□□ -0.04
COL6A3P12111 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.83□□□□□ -0.04
COL6A3P12111 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A3P12111 ATP5G1P7-201ENST00000444398 400 ntBASIC14.83□□□□□ -0.04
COL6A3P12111 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A3P12111 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.83□□□□□ -0.04
COL6A3P12111 MECP2-226ENST00000640414 897 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A3P12111 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A3P12111 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A3P12111 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 CICP23-201ENST00000605013 2741 ntBASIC14.82□□□□□ -0.04
COL6A3P12111 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A3P12111 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.82□□□□□ -0.04
COL6A3P12111 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 RPS6-201ENST00000315377 863 ntTSL 3 BASIC14.82□□□□□ -0.04
COL6A3P12111 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
COL6A3P12111 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 FXYD3-210ENST00000604621 548 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms